Index A | B | C | D | E | F | G | I | M | O | P | S | V A add_exponential_phase() (in module growthcurves.plot) add_fitted_curve() (in module growthcurves.plot) add_N0_line() (in module growthcurves.plot) add_od_max_line() (in module growthcurves.plot) annotate_plot() (in module growthcurves.plot) B bad_fit_stats() (in module growthcurves.inference) blank_subtraction() (in module growthcurves) (in module growthcurves.preprocessing) C compare_methods() (in module growthcurves) (in module growthcurves.inference) compute_first_derivative() (in module growthcurves.inference) compute_instantaneous_mu() (in module growthcurves.inference) compute_mu_max() (in module growthcurves.inference) compute_phase_boundaries() (in module growthcurves.inference) compute_phase_boundaries_mu_threshold() (in module growthcurves.inference) compute_phase_boundaries_tangent() (in module growthcurves.inference) compute_rmse() (in module growthcurves.inference) compute_sliding_window_growth_rate() (in module growthcurves.inference) create_base_plot() (in module growthcurves.plot) D detect_no_growth() (in module growthcurves.inference) detect_outliers() (in module growthcurves.preprocessing) detect_outliers_ecod() (in module growthcurves.preprocessing) detect_outliers_hampel() (in module growthcurves.preprocessing) detect_outliers_iqr() (in module growthcurves.preprocessing) E evaluate_parametric_model() (in module growthcurves.models) extract_stats() (in module growthcurves.inference) F fit_mech_baranyi() (in module growthcurves.parametric) fit_mech_gompertz() (in module growthcurves.parametric) fit_mech_logistic() (in module growthcurves.parametric) fit_mech_richards() (in module growthcurves.parametric) fit_model() (in module growthcurves) (in module growthcurves.fit) fit_non_parametric() (in module growthcurves.non_parametric) fit_parametric() (in module growthcurves.parametric) fit_phenom_gompertz() (in module growthcurves.parametric) fit_phenom_gompertz_modified() (in module growthcurves.parametric) fit_phenom_logistic() (in module growthcurves.parametric) fit_phenom_richards() (in module growthcurves.parametric) fit_sliding_window() (in module growthcurves.non_parametric) fit_spline() (in module growthcurves.non_parametric) G get_all_models() (in module growthcurves) (in module growthcurves.models) get_all_parametric_models() (in module growthcurves) (in module growthcurves.models) get_model_category() (in module growthcurves) (in module growthcurves.models) growthcurves module growthcurves.fit module growthcurves.inference module growthcurves.models module growthcurves.non_parametric module growthcurves.parametric module growthcurves.plot module growthcurves.preprocessing module I is_no_growth() (in module growthcurves.inference) M mech_baranyi_model() (in module growthcurves.models) mech_baranyi_ode() (in module growthcurves.models) mech_gompertz_model() (in module growthcurves.models) mech_gompertz_ode() (in module growthcurves.models) mech_logistic_model() (in module growthcurves.models) mech_logistic_ode() (in module growthcurves.models) mech_richards_model() (in module growthcurves.models) mech_richards_ode() (in module growthcurves.models) module growthcurves growthcurves.fit growthcurves.inference growthcurves.models growthcurves.non_parametric growthcurves.parametric growthcurves.plot growthcurves.preprocessing O out_of_iqr_window() (in module growthcurves.preprocessing) P path_correct() (in module growthcurves) (in module growthcurves.preprocessing) phenom_gompertz_model() (in module growthcurves.models) phenom_gompertz_modified_model() (in module growthcurves.models) phenom_logistic_model() (in module growthcurves.models) phenom_richards_model() (in module growthcurves.models) plot_derivative_metric() (in module growthcurves.plot) plot_growth_stats_comparison() (in module growthcurves.plot) prepare_fitted_curve() (in module growthcurves.plot) prepare_tangent_line() (in module growthcurves.plot) S smooth() (in module growthcurves.inference) spline_from_params() (in module growthcurves.models) spline_model() (in module growthcurves.models) V validate_data() (in module growthcurves.inference)